STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844625F-box-like/WD repeat-containing protein TBL1XR1. (549 aa)    
Predicted Functional Partners:
kmt2e
Lysine methyltransferase 2E.
    
 0.973
ncor2
Nuclear receptor corepressor 2.
   
 0.936
ncor1
Nuclear receptor corepressor 1.
   
 0.936
ctnnb1
Catenin beta 1.
  
 0.923
hdac3
Histone deacetylase 3.
   
 0.901
LOC114853661
Crystallin J1A-like.
   
 0.898
LOC114865743
Catenin beta-1-like.
  
 0.879
sirt1
Sirtuin 1.
   
 0.878
ENSBSLP00000042339
annotation not available
    
 0.877
LOC114855169
PHD finger protein 20-like.
    
 0.877
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.