STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptrh2peptidyl-tRNA hydrolase 2. (171 aa)    
Predicted Functional Partners:
gatb
glutamyl-tRNA amidotransferase subunit B.
    
  0.779
LOC114851979
Transmembrane protein 109-like.
    
  0.779
usp30
Ubiquitin specific peptidase 30.
    
  0.700
tomm70
Translocase of outer mitochondrial membrane 70.
     
 0.627
vdac1
Voltage dependent anion channel 1.
   
 
  0.627
LOC114870705
Cytochrome c iso-1/iso-2.
   
 
 0.566
fkbp8
FKBP prolyl isomerase 8.
   
  0.558
LOC114857938-2
Peroxisomal membrane protein 11A-like.
   
  0.558
nup155
Nucleoporin 155.
    
  0.549
LOC114857934
Mitochondrial import receptor subunit TOM20 homolog.
   
 
 0.522
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.