STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf21Transcription factor 21. (174 aa)    
Predicted Functional Partners:
LOC114853406
Transcription factor E2-alpha-like.
    
 0.764
LOC114845207
Transcription factor E2-alpha-like.
    
 0.764
tcf12
Transcription factor 12.
    
 0.764
TCF4
Transcription factor 4.
    
 0.764
LOC114857908
Transcription factor 12-like.
    
 0.743
gata5
GATA binding protein 5.
   
 0.605
gata4
GATA binding protein 4.
   
 0.590
gata6
GATA binding protein 6.
   
 0.585
ldb1
LIM domain binding 1.
    
 0.553
ldb2
LIM domain binding 2.
    
 0.553
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.