STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aqrAquarius intron-binding spliceosomal factor. (1476 aa)    
Predicted Functional Partners:
ENSBSLP00000007473
ISY1 splicing factor homolog.
 
  
 0.999
xab2
XPA binding protein 2.
   
 0.999
prpf8
pre-mRNA processing factor 8.
   
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
rbm22
RNA binding motif protein 22.
    
 0.999
bud31
BUD31 homolog.
    
  0.999
prpf19
pre-mRNA processing factor 19.
    
 0.999
cdc5l
Cell division cycle 5 like.
   
 0.999
cdc40
Cell division cycle 40.
   
 0.999
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.