STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab32RAB32, member RAS oncogene family. (273 aa)    
Predicted Functional Partners:
LOC114869684
Rab proteins geranylgeranyltransferase component A 1-like.
    
 0.742
gak
Cyclin G associated kinase.
    
 
 0.733
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.731
ankrd27
Ankyrin repeat domain 27.
    
 
 0.702
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.637
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.581
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.576
dnajc6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.559
LOC114862049
Rab GDP dissociation inhibitor beta-like.
    
 0.533
LOC114855822
Rab GDP dissociation inhibitor beta-like.
    
 0.533
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.