STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tubd1Tubulin delta 1. (443 aa)    
Predicted Functional Partners:
tubgcp2
Tubulin gamma complex associated protein 2.
   
 0.989
tubgcp4
Tubulin gamma complex associated protein 4.
    
 0.986
tubgcp5
Tubulin gamma complex associated protein 5.
    
 0.984
tubgcp3
Tubulin gamma complex associated protein 3.
   
 0.971
tubgcp6
Tubulin gamma complex associated protein 6.
   
 0.971
nedd1
NEDD1 gamma-tubulin ring complex targeting factor.
    
 0.940
LOC114867448
Mitotic-spindle organizing protein 2-like.
    
 0.867
LOC114853433
Pentatricopeptide repeat-containing protein 1, mitochondrial-like.
   
 0.816
topaz1
Testis and ovary specific PAZ domain containing 1.
   
 0.816
LOC114859810
Tectonin beta-propeller repeat-containing protein 1-like.
   
 0.816
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.