STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsmce2NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase. (230 aa)    
Predicted Functional Partners:
smc5
Structural maintenance of chromosomes 5.
    
 0.999
nsmce1
NSE1 homolog, SMC5-SMC6 complex component.
    
 0.999
nsmce4a
NSE4 homolog A, SMC5-SMC6 complex component.
    
 0.999
smc6
Structural maintenance of chromosomes 6.
    
 0.999
ENSBSLP00000049498
Necdin-like 2.
    
 0.999
LOC114859398
Neuronal vesicle trafficking-associated protein 1-like.
    
 0.989
ENSBSLP00000026957
annotation not available
    
 0.965
ENSBSLP00000030042
annotation not available
    
 0.965
ENSBSLP00000032901
annotation not available
    
 0.965
ENSBSLP00000053393
annotation not available
    
 0.965
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.