STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
suv39h1Suppressor of variegation 3-9 homolog 1. (454 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 0.977
sirt1
Sirtuin 1.
    
 0.975
cbx5
Chromobox 5.
   
0.965
LOC114865848
Chromobox protein homolog 3-like.
   
 0.965
CBX1
Chromobox 1.
   
0.965
CBX1-2
Chromobox 1.
   
0.965
rrp8
Ribosomal RNA processing 8.
   
 0.962
eed
Embryonic ectoderm development.
    
 0.957
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
  
 0.956
rb1
RB transcriptional corepressor 1.
    
 0.949
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.