STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubr5Ubiquitin protein ligase E3 component n-recognin 5. (2849 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
  
0.980
rps27a
Ribosomal protein S27a.
    
 
 0.902
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.881
ENSBSLP00000037601
Ubiquitin B.
    
 
 0.873
paip1
poly(A) binding protein interacting protein 1.
   
   0.721
LOC114844716
Eukaryotic translation initiation factor 4 gamma 1-like.
   
   0.721
EIF4G1
Eukaryotic translation initiation factor 4 gamma 1.
   
   0.721
eif4g3
Eukaryotic translation initiation factor 4 gamma 3.
   
   0.721
setd2
SET domain containing 2, histone lysine methyltransferase.
   
  
 0.715
ENSBSLP00000023484
annotation not available
    
   0.706
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.