STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chatCholine O-acetyltransferase. (701 aa)    
Predicted Functional Partners:
rpp14
Ribonuclease P/MRP subunit p14.
   
 0.842
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
   
 
 0.840
scp2
Sterol carrier protein 2.
   
 0.822
LOC114853152
Non-specific lipid-transfer protein-like.
   
 0.822
chka
Choline kinase alpha.
 
 
 
  0.813
ENSBSLP00000028945
Phosphoethanolamine/phosphocholine phosphatase 1.
     
 0.810
LOC114857746
Choline/ethanolamine kinase-like.
 
 
 
  0.809
cpt2
Carnitine palmitoyltransferase 2.
  
0.778
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.764
LOC114864912
Malate synthase-like.
   
  
 0.742
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.