STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc47Leucine rich repeat containing 47. (562 aa)    
Predicted Functional Partners:
fdxacb1
Ferredoxin-fold anticodon binding domain containing 1.
  
 0.998
fars2
phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.995
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.974
yars1
tyrosyl-tRNA synthetase 1.
  
  
 0.957
rps11
Ribosomal protein S11.
  
 
 0.947
riok1
RIO kinase 1.
    
 
 0.923
rps16
Ribosomal protein S16.
  
 
 0.922
iars1
isoleucyl-tRNA synthetase 1.
  
 
 0.920
eif1ad
Eukaryotic translation initiation factor 1A domain containing.
   
 
 0.915
rps3
Ribosomal protein S3.
  
 
 0.912
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.