STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgs1Trimethylguanosine synthase 1. (795 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.983
snrpe
Small nuclear ribonucleoprotein polypeptide E.
    
 0.981
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
    
  0.981
ncoa6
Nuclear receptor coactivator 6.
    
 0.893
ENSBSLP00000050458
Small nuclear ribonucleoprotein D3 polypeptide, like.
    
 0.836
naa38
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 0.805
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
    
 0.805
spaca6
Sperm acrosome associated 6.
    
 0.805
ENSBSLP00000048814
annotation not available
    
 0.805
ddx20
DEAD-box helicase 20.
   
 0.800
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.