STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp200Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)    
Predicted Functional Partners:
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.999
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.999
plrg1
Pleiotropic regulator 1.
    
 0.999
sf3b3
Splicing factor 3b subunit 3.
   
 0.999
LOC114859882
E3 ubiquitin-protein ligase RNF113A-like.
   
 0.999
lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.999
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.999
rbmx2
RNA binding motif protein X-linked 2.
    
 0.999
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
ENSBSLP00000007473
ISY1 splicing factor homolog.
    
 0.999
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.