STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ercc6ERCC excision repair 6, chromatin remodeling factor. (1423 aa)    
Predicted Functional Partners:
polr2a
RNA polymerase II subunit A.
    
 0.996
xpa
XPA, DNA damage recognition and repair factor.
    
 0.995
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.994
polr2i
RNA polymerase II subunit I.
    
 0.991
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 0.991
polr2d
RNA polymerase II subunit D.
    
 0.986
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
   
 0.985
ddb1
Damage specific DNA binding protein 1.
    
 0.982
wdr61
WD repeat domain 61.
   
 0.981
polr2c
RNA polymerase II subunit C.
   
 0.980
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.