STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sowahcSosondowah ankyrin repeat domain family member C. (403 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.742
ift81
Intraflagellar transport 81.
    
 0.620
rps3
Ribosomal protein S3.
    
 0.586
ift88
Intraflagellar transport 88.
   
 0.585
mars1
methionyl-tRNA synthetase 1.
   
 0.584
ift22
Intraflagellar transport 22.
    
 0.583
traf7
TNF receptor associated factor 7.
    
  0.577
LOC114860524
Tetratricopeptide repeat protein 30A-like.
    
 0.567
ift57
Intraflagellar transport 57.
    
 0.563
wdr90
WD repeat domain 90.
    
 0.560
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.