STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
r3hdm2R3H domain containing 2. (1069 aa)    
Predicted Functional Partners:
LOC114860516
Voltage-dependent calcium channel gamma-1 subunit-like.
   
 
  0.703
cacng6
Calcium voltage-gated channel auxiliary subunit gamma 6.
   
 
  0.566
LOC114866159
Voltage-dependent calcium channel gamma-6 subunit-like.
   
 
  0.566
polr3b
RNA polymerase III subunit B.
    
 
 0.455
LOC114855133
Voltage-dependent L-type calcium channel subunit alpha-1D-like.
   
 
 0.447
CACNA1D
Calcium voltage-gated channel subunit alpha1 D.
   
 
 0.447
LOC114862070
Voltage-dependent L-type calcium channel subunit alpha-1C-like.
   
 
 0.447
LOC114856240
Cytochrome b-c1 complex subunit 1, mitochondrial.
   
 
 0.435
pmpcb
Peptidase, mitochondrial processing beta subunit.
   
 
 0.435
LOC114864500
DNA-directed RNA polymerases I and III subunit RPAC2-like.
    
 
 0.405
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.