STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114846041Transcription factor Sox-8-like. (458 aa)    
Predicted Functional Partners:
LOC114867101
POU domain, class 5, transcription factor 1-like.
    
 0.579
ENSBSLP00000014214
annotation not available
    
 0.476
LOC114856819
Junction plakoglobin-like.
    
 0.456
jup
Junction plakoglobin.
    
 0.456
LOC114865743
Catenin beta-1-like.
    
 0.456
ctnnb1
Catenin beta 1.
    
 0.456
LOC114848842
Runt-related transcription factor 1-like.
   
 0.454
runx2
RUNX family transcription factor 2.
   
 0.454
LOC114848183
Runt-related transcription factor 3-like.
   
 0.454
ENSBSLP00000048009
annotation not available
   
 0.454
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.