STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844008Ras-related protein Rab-8A. (236 aa)    
Predicted Functional Partners:
rab3il1
RAB3A interacting protein like 1.
    
 0.829
rab3ip
RAB3A interacting protein.
    
 0.829
c9orf72
C9orf72-SMCR8 complex subunit.
    
 0.811
LOC114862049
Rab GDP dissociation inhibitor beta-like.
   
 0.809
LOC114855822
Rab GDP dissociation inhibitor beta-like.
   
 0.809
LOC114858369
Rab GDP dissociation inhibitor alpha.
   
 0.809
exoc4
Exocyst complex component 4.
    
 0.806
LOC114853422
Guanine nucleotide exchange protein SMCR8-like.
    
 0.788
smcr8
SMCR8-C9orf72 complex subunit.
    
 0.788
wdr41
WD repeat domain 41.
     
 0.785
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.