STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114868665Tapasin-related protein-like. (423 aa)    
Predicted Functional Partners:
lrguk
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.662
spag17
Sperm associated antigen 17.
    
 
 0.585
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.546
ENSBSLP00000050809
annotation not available
    
 
 0.527
cfap69
Cilia and flagella associated protein 69.
    
   0.523
polr3c
RNA polymerase III subunit C.
    
   0.523
hspa14
Heat shock protein family A (Hsp70) member 14.
    
 
 0.488
LOC114865399
c-Myc-binding protein-like.
    
 
 0.419
LOC114842779
c-Myc-binding protein-like.
    
 
 0.419
ercc6l2
ERCC excision repair 6 like 2.
   
 
 0.416
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.