STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc7Zinc finger CCHC-type containing 7. (632 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 0.996
tent4b
Terminal nucleotidyltransferase 4B.
   
 0.942
ENSBSLP00000015542
Terminal nucleotidyltransferase 4A.
   
 0.939
tent4a
Terminal nucleotidyltransferase 4A.
   
 0.939
LOC114843149
Terminal nucleotidyltransferase 4A-like.
   
 0.939
zcchc8
Zinc finger CCHC-type containing 8.
     
 0.890
skiv2l
Ski2 like RNA helicase.
   
 0.752
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.692
exosc10
Exosome component 10.
   
 
 0.689
utp18
UTP18 small subunit processome component.
   
 
 0.680
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.