STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114846565arf-GAP with dual PH domain-containing protein 1-like. (378 aa)    
Predicted Functional Partners:
arfgap1
ADP ribosylation factor GTPase activating protein 1.
    
 0.741
LOC114850194
Kinesin-like protein KIF13B.
    
 
 0.629
kif13a
Kinesin family member 13A.
    
 
 0.629
LOC114851745
Kinesin-like protein KIF13B.
    
 
 0.629
arfgap3
ADP ribosylation factor GTPase activating protein 3.
    
 0.553
arfgap2
ADP ribosylation factor GTPase activating protein 2.
    
 0.553
LOC114843176
CAP-Gly domain-containing linker protein 1-like.
    
 
 0.544
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 0.528
APPL1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 0.528
appl2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 0.528
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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