STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114855782E3 ubiquitin-protein ligase Itchy-like. (865 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.953
ENSBSLP00000037601
Ubiquitin B.
    
 0.952
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.944
LOC114847049
CASP8 and FADD-like apoptosis regulator.
    
 0.944
traf6
TNF receptor associated factor 6.
    
 0.936
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
  
 
0.916
LOC114857041
NEDD4-like E3 ubiquitin-protein ligase WWP2.
  
 
0.896
mdm2
MDM2 proto-oncogene.
    
 0.872
cblb
Cbl proto-oncogene B.
    
 0.861
LOC114865542
Thioredoxin-interacting protein-like.
    
 
 0.861
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.