STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adamts18ADAM metallopeptidase with thrombospondin type 1 motif 18. (1259 aa)    
Predicted Functional Partners:
LOC114869264
Beta-1,3-glucosyltransferase-like.
    
 0.562
LOC114868371
Beta-1,3-glucosyltransferase-like.
    
 0.562
pofut2
Protein O-fucosyltransferase 2.
     
 0.541
sall4
Spalt like transcription factor 4.
   
  
 0.478
ush1c
USH1 protein network component harmonin.
    
 
 0.453
gpr84
G protein-coupled receptor 84.
      
 0.453
irx3
Iroquois homeobox 3.
      
 0.442
scube3
Signal peptide, CUB domain and EGF like domain containing 3.
   
 0.431
ccdc51
Coiled-coil domain containing 51.
      
 0.416
scube2
Signal peptide, CUB domain and EGF like domain containing 2.
   
 0.416
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.