STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk5rap1CDK5 regulatory subunit associated protein 1. (565 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
    
 
 0.929
exosc5
Exosome component 5.
   
   0.901
prpf40a
pre-mRNA processing factor 40 homolog A.
 
 
   0.828
endov
Endonuclease V.
  
 
 0.756
urod
Uroporphyrinogen decarboxylase.
  
 
 0.756
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.655
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
  
 0.597
taf8
TATA-box binding protein associated factor 8.
 
      0.583
exosc6
Exosome component 6.
   
   0.582
exosc4
Exosome component 4.
   
   0.582
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.