STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wacWW domain containing adaptor with coiled-coil. (571 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.983
snrpe
Small nuclear ribonucleoprotein polypeptide E.
    
 0.973
sf3b2
Splicing factor 3b subunit 2.
   
 0.973
ENSBSLP00000048522
Small nuclear ribonucleoprotein polypeptide G.
    
 0.972
sf3b3
Splicing factor 3b subunit 3.
    
 0.971
sf3a2
Splicing factor 3a subunit 2.
    
 0.970
LOC114849870
RNA-binding protein 25-like.
   
 0.967
LOC114848380
RNA-binding protein 25-like.
   
 0.967
snrnp70
Small nuclear ribonucleoprotein U1 subunit 70.
    
 0.966
ENSBSLP00000017566
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.966
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.