STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec22aSEC22 homolog A, vesicle trafficking protein. (303 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5.
   
 0.986
gosr2
Golgi SNAP receptor complex member 2.
    
 0.983
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.983
stx18
Syntaxin 18.
   
 0.979
LOC114869187
Vesicle transport protein SEC20-like.
   
 0.979
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.978
ykt6
YKT6 v-SNARE homolog.
    
 0.977
scfd1
Sec1 family domain containing 1.
   
 0.966
stx10
Syntaxin 10.
    
 0.960
stx6
Syntaxin 6.
    
 0.960
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.