STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114847070Alsin-like. (1653 aa)    
Predicted Functional Partners:
LOC114868516
Rab5 GDP/GTP exchange factor-like.
   
 0.989
LOC114862273
Rab5 GDP/GTP exchange factor-like.
   
 0.989
LOC114869334
Rab5 GDP/GTP exchange factor-like.
   
 0.989
LOC114846828
ranBP2-like and GRIP domain-containing protein 3.
  
 0.900
rab5c
RAB5C, member RAS oncogene family.
    
 0.859
RAB17
RAB17, member RAS oncogene family.
    
 0.859
LOC114865393
Ras-related protein Rab-5A.
    
 0.859
LOC114845616
Ras-related protein Rab-5C-like.
    
 0.859
LOC114843335
Ras-related protein Rab-5A-like.
    
 0.859
LOC114847336
Ras-related protein Rab-5B-like.
    
 0.859
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.