STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844905Calponin-2-like. (322 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
 
 0.903
pacrg
Parkin coregulated.
    
 
 0.755
enkur
Enkurin, TRPC channel interacting protein.
   
 
 0.740
tlnrd1
Talin rod domain containing 1.
   
 
 0.717
efhb
EF-hand domain family member B.
   
   0.712
WDR1
WD repeat domain 1.
   
 
 0.684
efhc1
EF-hand domain containing 1.
    
 
 0.683
efhc2
EF-hand domain containing 2.
    
 
 0.683
LOC114844824
Tubulin alpha chain-like.
   
 0.682
LOC114845917
Tubulin alpha-1A chain-like.
   
 0.682
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.