STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHEL01_v208887RTR1-type domain-containing protein. (316 aa)    
Predicted Functional Partners:
DHEL01_v206276
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.977
DHEL01_v203535
DNA-directed RNA polymerase II subunit RPB7.
    
 0.977
DHEL01_v205527
DNA-directed RNA polymerase II polypeptide.
    
 0.975
DHEL01_v202185
RNA_pol_L_2 domain-containing protein.
    
 0.975
DHEL01_v206158
DNA-directed RNA polymerase II polypeptide.
    
 0.974
DHEL01_v204791
RNA polymerase Rpb3/RpoA insert domain-containing protein.
    
 0.974
DHEL01_v208339
RNA polymerase M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.969
DHEL01_v209414
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.968
DHEL01_v201477
RNA polymerase Rpb6.
    
 0.968
DHEL01_v207382
DNA directed RNA polymerase.
    
 0.966
Your Current Organism:
Diaporthe helianthi
NCBI taxonomy Id: 158607
Other names: CBS 592.81, D. helianthi, Phomopsis helianthi, Phomopsis sp. CBS 187.87
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