DHEL01_v202873 protein (Diaporthe helianthi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DHEL01_v202873

Uncharacterized protein. (1921 aa)

Predicted Functional Partners:

DHEL01_v201708

0.749

DHEL01_v200715

0.616

DHEL01_v202717

0.597

DHEL01_v207804

0.538

DHEL01_v204738

0.531

DHEL01_v202804

0.531

DHEL01_v201944

0.531

DHEL01_v202157

0.528

DHEL01_v205044

0.511

DHEL01_v207926

0.507

Your Current Organism:

Diaporthe helianthi

NCBI taxonomy Id: 158607
Other names: CBS 592.81, D. helianthi, Phomopsis helianthi, Phomopsis sp. CBS 187.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHEL01_v200715	DHEL01_v201708	A0A2P5IEH0	A0A2P5IBM3	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.937
DHEL01_v200715	DHEL01_v201944	A0A2P5IEH0	A0A2P5IAX7	Uncharacterized protein.	WD repeat domain-containing protein.	0.978
DHEL01_v200715	DHEL01_v202157	A0A2P5IEH0	A0A2P5IAC0	Uncharacterized protein.	Mitotic spindle checkpoint component mad2.	0.999
DHEL01_v200715	DHEL01_v202717	A0A2P5IEH0	A0A2P5I8S4	Uncharacterized protein.	Kinesin-II 85 kDa subunit; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.965
DHEL01_v200715	DHEL01_v202804	A0A2P5IEH0	A0A2P5I8K6	Uncharacterized protein.	Cell division cycle 20, cofactor-APC complex.	0.986
DHEL01_v200715	DHEL01_v202873	A0A2P5IEH0	A0A2P5I897	Uncharacterized protein.	Uncharacterized protein.	0.616
DHEL01_v200715	DHEL01_v204738	A0A2P5IEH0	A0A2P5I322	Uncharacterized protein.	WD domain-containing protein.	0.974
DHEL01_v200715	DHEL01_v205044	A0A2P5IEH0	A0A2P5I216	Uncharacterized protein.	HEC/Ndc80p family protein.	0.992
DHEL01_v200715	DHEL01_v207804	A0A2P5IEH0	A0A2P5HU71	Uncharacterized protein.	Protein kinase domain-containing protein.	0.959
DHEL01_v201708	DHEL01_v200715	A0A2P5IBM3	A0A2P5IEH0	Peptidase C50 domain-containing protein.	Uncharacterized protein.	0.937
DHEL01_v201708	DHEL01_v201944	A0A2P5IBM3	A0A2P5IAX7	Peptidase C50 domain-containing protein.	WD repeat domain-containing protein.	0.844
DHEL01_v201708	DHEL01_v202157	A0A2P5IBM3	A0A2P5IAC0	Peptidase C50 domain-containing protein.	Mitotic spindle checkpoint component mad2.	0.865
DHEL01_v201708	DHEL01_v202717	A0A2P5IBM3	A0A2P5I8S4	Peptidase C50 domain-containing protein.	Kinesin-II 85 kDa subunit; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.926
DHEL01_v201708	DHEL01_v202804	A0A2P5IBM3	A0A2P5I8K6	Peptidase C50 domain-containing protein.	Cell division cycle 20, cofactor-APC complex.	0.844
DHEL01_v201708	DHEL01_v202873	A0A2P5IBM3	A0A2P5I897	Peptidase C50 domain-containing protein.	Uncharacterized protein.	0.749
DHEL01_v201708	DHEL01_v204738	A0A2P5IBM3	A0A2P5I322	Peptidase C50 domain-containing protein.	WD domain-containing protein.	0.844
DHEL01_v201708	DHEL01_v205044	A0A2P5IBM3	A0A2P5I216	Peptidase C50 domain-containing protein.	HEC/Ndc80p family protein.	0.924
DHEL01_v201708	DHEL01_v207804	A0A2P5IBM3	A0A2P5HU71	Peptidase C50 domain-containing protein.	Protein kinase domain-containing protein.	0.914
DHEL01_v201944	DHEL01_v200715	A0A2P5IAX7	A0A2P5IEH0	WD repeat domain-containing protein.	Uncharacterized protein.	0.978
DHEL01_v201944	DHEL01_v201708	A0A2P5IAX7	A0A2P5IBM3	WD repeat domain-containing protein.	Peptidase C50 domain-containing protein.	0.844