DHEL01_v202612 protein (Diaporthe helianthi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DHEL01_v202612

MFS domain-containing protein. (231 aa)

Predicted Functional Partners:

DHEL01_v206170

0.471

DHEL01_v205017

0.456

DHEL01_v201928

0.454

DHEL01_v210693

0.445

DHEL01_v205758

0.444

DHEL01_v202654

0.441

DHEL01_v203743

0.439

DHEL01_v202282

0.435

DHEL01_v204573

0.433

DHEL01_v209414

0.422

Your Current Organism:

Diaporthe helianthi

NCBI taxonomy Id: 158607
Other names: CBS 592.81, D. helianthi, Phomopsis helianthi, Phomopsis sp. CBS 187.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHEL01_v201928	DHEL01_v202612	A0A2P5IAZ6	A0A2P5I8Z5	MFS domain-containing protein.	MFS domain-containing protein.	0.454
DHEL01_v202282	DHEL01_v202612	A0A2P5I9X6	A0A2P5I8Z5	Uncharacterized protein.	MFS domain-containing protein.	0.435
DHEL01_v202282	DHEL01_v205017	A0A2P5I9X6	A0A2P5I255	Uncharacterized protein.	MFS domain-containing protein.	0.531
DHEL01_v202282	DHEL01_v206170	A0A2P5I9X6	A0A2P5HYU9	Uncharacterized protein.	MFS domain-containing protein.	0.529
DHEL01_v202612	DHEL01_v201928	A0A2P5I8Z5	A0A2P5IAZ6	MFS domain-containing protein.	MFS domain-containing protein.	0.454
DHEL01_v202612	DHEL01_v202282	A0A2P5I8Z5	A0A2P5I9X6	MFS domain-containing protein.	Uncharacterized protein.	0.435
DHEL01_v202612	DHEL01_v202654	A0A2P5I8Z5	A0A2P5I8V7	MFS domain-containing protein.	Major facilitator superfamily transporter.	0.441
DHEL01_v202612	DHEL01_v203743	A0A2P5I8Z5	A0A2P5I5V4	MFS domain-containing protein.	Major facilitator superfamily transporter.	0.439
DHEL01_v202612	DHEL01_v204573	A0A2P5I8Z5	A0A2P5I3F3	MFS domain-containing protein.	PHD-type domain-containing protein.	0.433
DHEL01_v202612	DHEL01_v205017	A0A2P5I8Z5	A0A2P5I255	MFS domain-containing protein.	MFS domain-containing protein.	0.456
DHEL01_v202612	DHEL01_v205758	A0A2P5I8Z5	A0A2P5I030	MFS domain-containing protein.	MFS domain-containing protein.	0.444
DHEL01_v202612	DHEL01_v206170	A0A2P5I8Z5	A0A2P5HYU9	MFS domain-containing protein.	MFS domain-containing protein.	0.471
DHEL01_v202612	DHEL01_v209414	A0A2P5I8Z5	A0A2P5HPM3	MFS domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.422
DHEL01_v202612	DHEL01_v210693	A0A2P5I8Z5	A0A2P5HKX9	MFS domain-containing protein.	MFS domain-containing protein.	0.445
DHEL01_v202654	DHEL01_v202612	A0A2P5I8V7	A0A2P5I8Z5	Major facilitator superfamily transporter.	MFS domain-containing protein.	0.441
DHEL01_v203743	DHEL01_v202612	A0A2P5I5V4	A0A2P5I8Z5	Major facilitator superfamily transporter.	MFS domain-containing protein.	0.439
DHEL01_v204573	DHEL01_v202612	A0A2P5I3F3	A0A2P5I8Z5	PHD-type domain-containing protein.	MFS domain-containing protein.	0.433
DHEL01_v204573	DHEL01_v209414	A0A2P5I3F3	A0A2P5HPM3	PHD-type domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.644
DHEL01_v205017	DHEL01_v202282	A0A2P5I255	A0A2P5I9X6	MFS domain-containing protein.	Uncharacterized protein.	0.531
DHEL01_v205017	DHEL01_v202612	A0A2P5I255	A0A2P5I8Z5	MFS domain-containing protein.	MFS domain-containing protein.	0.456