STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORJ05461.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
ORJ05300.1
Deoxyribodipyrimidine photo-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.
  
  
 0.986
ORJ05301.1
Helix-turn-helix-type transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.903
ORJ05295.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.899
ORJ05299.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.847
ORJ05296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.842
ORJ05297.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.842
ORJ05294.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.832
ORJ05460.1
Zinc/iron-chelating domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.816
ORJ05298.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.816
ORJ06185.1
Bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.765
Your Current Organism:
Pseudomonas graminis
NCBI taxonomy Id: 158627
Other names: CCUG 51504, CIP 105897, DSM 11363, LMG 21661, LMG:21661, P. graminis, strain P 294/08
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.