STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORJ03696.1Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
ORJ06655.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
ORJ03695.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
ORJ03689.1
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
ORJ03684.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
ORJ03694.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
ORJ03692.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
ORJ03687.1
ImcF-like family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
ORJ05371.1
Hcp1 family type VI secretion system effector; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
ORJ04802.1
Hcp1 family type VI secretion system effector; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
ORJ06685.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
Your Current Organism:
Pseudomonas graminis
NCBI taxonomy Id: 158627
Other names: CCUG 51504, CIP 105897, DSM 11363, LMG 21661, LMG:21661, P. graminis, strain P 294/08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.