STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALI52777.1Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)    
Predicted Functional Partners:
ALI52161.1
Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
ALI52223.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.533
ALI53453.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.512
ALI53233.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
ALI51719.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.473
ALI52142.1
Magnesium transporter MgtC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.473
ALI53397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.472
ALI52776.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.459
ALI51814.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
ALI51767.1
Glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Lactobacillus helveticus
NCBI taxonomy Id: 1587
Other names: ATCC 15009, Bacillus casei e, Bacillus e, CCUG 30139, CIP 103146, Caseobacterium e, DSM 20075, IFO 15019, L. helveticus, LMG 13555, LMG 22464 [[Lactobacillus suntoryeus]], LMG 6413, LMG:13555, LMG:22464 [[Lactobacillus suntoryeus]], LMG:6413, Lactobacillus helveticum, Lactobacillus sp. NCIM 2126, Lactobacillus sp. NCIM 2733, Lactobacillus suntoryeus, Lactobacillus suntoryeus Cachat and Priest 2005, Lactobacterium helveticum, NBRC 15019, NCIMB 14005 [[Lactobacillus suntoryeus]], NRRL B-4526, Plocamobacterium helveticum, Thermobacterium helveticum, strain SA [[Lactobacillus suntoryeus]]
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