STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSCA_0807ABC transporter substrate-binding protein. (353 aa)    
Predicted Functional Partners:
BSCA_0804
ABC transporter permease.
 
  
 0.968
BSCA_0805
ABC transporter permease.
 
  
 0.968
BSCA_0806
Nitrate ABC transporter ATPase.
 
  
 0.968
BSCA_2481
ABC transporter permease.
 
  
 0.858
BSCA_1236
NMT1/THI5 like domain protein.
  
     0.691
BSCA_0300
ABC transporter ATP-binding protein.
 
  
 0.598
BSCA_1531
Putative monooxygenase.
 
  
 0.476
BSCA_0803
Amidohydrolase.
       0.465
BSCA_2346
Hypothetical protein.
  
  
 0.434
Your Current Organism:
Bifidobacterium scardovii
NCBI taxonomy Id: 158787
Other names: B. scardovii, Bifidobacterium scardovii Hoyles et al. 2002, CCUG 13008 A, DSM 13734, JCM 12489
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.