STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSCA_1237Aminoglycoside phosphotransferase. (380 aa)    
Predicted Functional Partners:
BSCA_1492
Threonine synthase.
    
 0.912
BSCA_1626
Homoserine dehydrogenase.
    
 0.912
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
     
  0.900
BSCA_1425
Branched-chain amino acid aminotransferase.
  
 
 0.863
BSCA_1196
S-adenosylhomocysteine hydrolase.
 
  
  0.838
BSCA_2141
Cystathionine beta-synthase.
    
  0.807
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.807
BSCA_0492
O-acetylhomoserine aminocarboxypropyltransferase.
    
  0.806
BSCA_1431
O-acetylhomoserine (thiol)-lyase.
    
  0.806
BSCA_1465
Cystathionine beta-lyase.
   
 
  0.806
Your Current Organism:
Bifidobacterium scardovii
NCBI taxonomy Id: 158787
Other names: B. scardovii, Bifidobacterium scardovii Hoyles et al. 2002, CCUG 13008 A, DSM 13734, JCM 12489
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.