Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BSCA_1663Phage integrase family protein; Belongs to the 'phage' integrase family. (406 aa)    
Predicted Functional Partners:
BSCA_0052
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
 
 
 0.770
BSCA_0775
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.756
BSCA_0160
Phage integrase; Belongs to the 'phage' integrase family.
 
 
 
 0.733
BSCA_1915
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.665
BSCA_1044
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
 
 
 
 0.578
Your Current Organism:
Bifidobacterium scardovii
NCBI taxonomy Id: 158787
Other names: B. scardovii, Bifidobacterium scardovii Hoyles et al. 2002, CCUG 13008 A, DSM 13734, JCM 12489
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