STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSCA_2011Cupin. (149 aa)    
Predicted Functional Partners:
BSCA_1854
Carboxymuconolactone decarboxylase.
   
 0.822
BSCA_1977
Flavodoxin.
 
     0.717
BSCA_1997
Flavodoxin.
 
     0.714
BSCA_1976
Flavodoxin.
 
     0.705
BSCA_2012
Hypothetical protein.
       0.466
BSCA_2003
LysR-type transcriptional regulator.
 
  
 0.444
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.407
BSCA_0431
GntR family transcriptional regulator.
  
  
 0.401
Your Current Organism:
Bifidobacterium scardovii
NCBI taxonomy Id: 158787
Other names: B. scardovii, Bifidobacterium scardovii Hoyles et al. 2002, CCUG 13008 A, DSM 13734, JCM 12489
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.