STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caf1A_3Pilin outer membrane usher protein SafC; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)    
Predicted Functional Partners:
fimC_2
Molecular chaperone FimC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.980
caf1M
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
fimC_3
Fimbrial chaperone protein FimC; Involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.939
AIR61146.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.900
AIR62766.1
Pilus assembly protein PapD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.897
fimF-2
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.886
fimF
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.875
fimA
Type-1 fimbrial protein subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.860
fimH_2
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.847
fimG
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.831
Your Current Organism:
Cedecea neteri
NCBI taxonomy Id: 158822
Other names: ATCC 33855, C. neteri, CCUG 18763, CDC 0621-75, CIP 103241, Cedecea sp. M006, Cedecea sp. ND02, Cedecea sp. ND14a, Cedecea sp. ND14b, DSM 13693, JCM 7582, LMG 7864, LMG:7864, NBRC 105707, NCTC 12120, strain 002
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