STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB91055.1Hypothetical protein; KEGG: ccm:Ccan_09520 2.8e-08 excinuclease ABC subunit A K03701. (147 aa)    
Predicted Functional Partners:
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
 
 
 0.959
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
   
 
 0.816
KXB91054.1
Hypothetical protein.
  
 
 0.812
KXB91053.1
KEGG: det:DET1114 0. type III restriction-modification system, restriction endonuclease subunit; K01156 type III restriction enzyme; Psort location: Cytoplasmic, score: 8.96.
       0.718
KXB91051.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.680
KXB91052.1
DNA (cytosine-5-)-methyltransferase; KEGG: det:DET1112 1.4e-163 type III restriction-modification system, methylase subunit; K07316 adenine-specific DNA-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.680
KXB91050.1
Helicase protein; KEGG: mph:MLP_35860 0. putative helicase; Psort location: Cytoplasmic, score: 8.96.
  
    0.660
KXB91056.1
Hypothetical protein.
       0.584
KXB91057.1
Hypothetical protein.
       0.584
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
 
 
 0.537
Your Current Organism:
Veillonellaceae bacterium KA00182
NCBI taxonomy Id: 1588748
Other names: V. bacterium KA00182
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