STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB90147.1Trypsin; KEGG: afn:Acfer_1792 7.6e-76 HtrA2 peptidase. (364 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.890
KXB90148.1
Metallo-beta-lactamase domain protein; KEGG: sng:SNE_A05550 1.0e-39 yycJ; putative metallo-hydrolase yycJ; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.832
rlmH
Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.802
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.657
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.632
KXB91566.1
Hydrolase, NUDIX family; KEGG: med:MELS_2024 3.6e-53 hydrolase; K01515 ADP-ribose pyrophosphatase; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.627
KXB92705.1
KEGG: med:MELS_1449 2.0e-100 3-hydroxybutyryl-CoA dehydratase; K01715 3-hydroxybutyryl-CoA dehydratase; Psort location: Cytoplasmic, score: 9.97.
    
  0.626
KXB90654.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
    
 0.623
KXB90143.1
KEGG: apv:Apar_0907 5.0e-127 thioredoxin-disulfide reductase K00384; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.623
KXB92689.1
Peptidase, S41 family; KEGG: med:MELS_2071 4.9e-72 peptidase; K03797 carboxyl-terminal processing protease; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S41A family.
    
 0.607
Your Current Organism:
Veillonellaceae bacterium KA00182
NCBI taxonomy Id: 1588748
Other names: V. bacterium KA00182
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