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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB93813.1NlpC/P60 family protein; KEGG: bmq:BMQ_1654 7.4e-30 lytF; endopeptidase LytF; Psort location: Cellwall, score: 9.21. (249 aa)    
Predicted Functional Partners:
KXB89153.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: med:MELS_0241 1.9e-56 D-alanyl-D-alanine carboxypeptidase domain protein; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Psort location: CytoplasmicMembrane, score: 9.96; Belongs to the peptidase S11 family.
  
 
 0.748
KXB89383.1
KEGG: med:MELS_1483 2.3e-58 N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase; Psort location: Cellwall, score: 8.76.
  
 
 0.698
KXB91753.1
Transglycosylase SLT domain protein; KEGG: bya:BANAU_1725 4.7e-21 yomI3; SPbeta phage protein.
 
  
 0.620
KXB92195.1
Penicillin-binding protein, 1A family; KEGG: ain:Acin_0910 6.3e-159 mrcA; penicillin-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.602
KXB93814.1
Cation diffusion facilitator family transporter; KEGG: msi:Msm_0789 1.1e-28 cation efflux system protein (zinc/cadmium/cobalt); Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.577
KXB89560.1
Transglycosylase; KEGG: bya:BANAU_0939 6.1e-44 pbpF; penicillin-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.543
KXB91737.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.541
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.538
KXB93650.1
Putative serine/threonine-protein kinase PrkC; KEGG: vpr:Vpar_0853 2.9e-147 serine/threonine protein kinase with PASTA sensor(s); K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.530
KXB88543.1
LysM domain protein; KEGG: pmo:Pmob_0425 0.0090 peptidoglycan-binding LysM; K01447 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.523
Your Current Organism:
Veillonellaceae bacterium DNF00626
NCBI taxonomy Id: 1588754
Other names: V. bacterium DNF00626
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