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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nusBTranscription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (131 aa)    
Predicted Functional Partners:
KXB93674.1
Exonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
    0.852
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
  
 
 0.825
KXB93675.1
Metallohydrolase, glycoprotease/Kae1 family; KEGG: vpr:Vpar_0918 3.1e-63 metal-dependent protease with chaperone activity; K01409 O-sialoglycoprotein endopeptidase; Psort location: Cytoplasmic, score: 7.50.
       0.811
KXB93678.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
    0.811
KXB93672.1
Putative geranyltranstransferase; KEGG: vpr:Vpar_0921 9.4e-62 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
  
    0.810
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
  
 0.810
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.807
KXB93680.1
Putative Xaa-Pro dipeptidase; KEGG: bli:BL01543 4.3e-73 yqhT; peptidase M24B, X-Pro dipeptidase YqhT; K01262 Xaa-Pro aminopeptidase; Psort location: Cytoplasmic, score: 9.97.
       0.769
folD
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
 
  
 0.768
KXB93677.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
    0.766
Your Current Organism:
Veillonellaceae bacterium DNF00626
NCBI taxonomy Id: 1588754
Other names: V. bacterium DNF00626
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