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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB93260.1Transcriptional regulator, Fur family; KEGG: mct:MCR_0333 2.8e-05 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 7.50; Belongs to the Fur family. (137 aa)    
Predicted Functional Partners:
KXB93263.1
KEGG: ova:OBV_00980 9.0e-73 ABC transporter ATP-binding protein; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.51.
 
  
 0.732
KXB93262.1
ABC transporter, substrate-binding protein; KEGG: apb:SAR116_2227 2.3e-28 periplasmic solute binding protein K09815; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.727
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.717
KXB93264.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 6.2e-26 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.701
KXB89241.1
Iron dependent repressor, DNA binding domain protein; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.665
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.557
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.555
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.548
KXB93261.1
Hypothetical protein.
       0.538
KXB93259.1
KEGG: ain:Acin_0371 7.9e-65 udp; uridine phosphorylase K00757; Psort location: Cytoplasmic, score: 9.67.
  
    0.520
Your Current Organism:
Veillonellaceae bacterium DNF00626
NCBI taxonomy Id: 1588754
Other names: V. bacterium DNF00626
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