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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB91172.1KEGG: vpr:Vpar_1520 3.2e-164 penicillin-binding protein transpeptidase; K03587 cell division protein FtsI (penicillin-binding protein 3); Psort location: CytoplasmicMembrane, score: 9.96. (654 aa)    
Predicted Functional Partners:
KXB89003.1
Cell cycle protein, FtsW/RodA/SpoVE family; KEGG: pfe:PSF113_4784 1.8e-42 ftsW; protein FtsW K03588; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 0.960
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.947
KXB93469.1
Penicillin-binding protein 2; KEGG: sri:SELR_24010 2.1e-135 pbpA; putative peptidoglycan glycosyltransferase K05515; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
0.942
KXB91173.1
HDIG domain protein; KEGG: dau:Daud_0478 3.2e-93 metal dependent phosphohydrolase; Psort location: Cytoplasmic, score: 7.50; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.865
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 0.859
KXB89560.1
Transglycosylase; KEGG: bya:BANAU_0939 6.1e-44 pbpF; penicillin-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.850
KXB88979.1
POTRA domain protein, FtsQ-type; Essential cell division protein.
 
 
 0.841
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.824
KXB93467.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.805
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.804
Your Current Organism:
Veillonellaceae bacterium DNF00626
NCBI taxonomy Id: 1588754
Other names: V. bacterium DNF00626
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