STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU53593.1Protein of unknown function. (589 aa)    
Predicted Functional Partners:
SDU78455.1
Protein of unknown function.
  
  
 0.753
SDT96336.1
Protein of unknown function.
  
  
 0.752
SDU38941.1
HNH endonuclease.
  
    0.618
SDU61079.1
Protein of unknown function.
  
     0.578
SDU72933.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.571
SDU36604.1
HNH endonuclease.
  
    0.560
SDU73181.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.555
SDU59807.1
HNH endonuclease.
  
     0.531
SDU51846.1
Hypothetical protein.
  
     0.530
SDU62403.1
HNH endonuclease.
  
     0.523
Your Current Organism:
Gordonia westfalica
NCBI taxonomy Id: 158898
Other names: CCUG 46924, DSM 44215, G. westfalica, Gordonia westfalica Linos et al. 2002, JCM 11757, NRRL B-24152, strain Kb2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.