STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU70617.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (410 aa)    
Predicted Functional Partners:
SDU70607.1
Helix-turn-helix.
       0.773
SDT84389.1
Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
     0.721
SDT87153.1
Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
     0.712
SDT90692.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.706
SDT84297.1
Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
     0.678
SDU43039.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
 
 
 0.660
SDT84091.1
Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
     0.636
SDT84095.1
Phage integrase family protein.
  
     0.626
SDU59454.1
Phage integrase family protein.
  
     0.621
SDU70597.1
DNA binding domain-containing protein, excisionase family.
     
 0.516
Your Current Organism:
Gordonia westfalica
NCBI taxonomy Id: 158898
Other names: CCUG 46924, DSM 44215, G. westfalica, Gordonia westfalica Linos et al. 2002, JCM 11757, NRRL B-24152, strain Kb2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.