STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU79345.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (243 aa)    
Predicted Functional Partners:
SDU50710.1
Fatty acid synthase.
  
 0.979
SDU80691.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.854
SDU71163.1
Polyketide synthase 13.
  
 0.831
SDU61102.1
Amino acid adenylation domain-containing protein.
  
 0.811
SDU80396.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
 
0.804
SDU79521.1
Short chain dehydrogenase.
  
     0.765
SDU82253.1
Hypothetical protein.
    
 0.744
SDU49978.1
Glutamate synthase (NADH) large subunit.
     
 0.731
SDU71771.1
Glutamate synthase (NADH) large subunit.
     
 0.731
SDU33814.1
Short chain dehydrogenase.
  
 
  0.725
Your Current Organism:
Gordonia westfalica
NCBI taxonomy Id: 158898
Other names: CCUG 46924, DSM 44215, G. westfalica, Gordonia westfalica Linos et al. 2002, JCM 11757, NRRL B-24152, strain Kb2
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