STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU84072.1ABC-2 type transport system permease protein. (260 aa)    
Predicted Functional Partners:
SDU84078.1
ABC-2 type transport system ATP-binding protein.
 
 0.984
SDU83884.1
ABC-2 type transport system permease protein.
 
 
 0.935
SDU74040.1
ABC-2 type transport system ATP-binding protein.
 
 0.882
SDU21997.1
ABC-2 type transport system ATP-binding protein.
 
 0.882
SDU83874.1
ABC-2 type transport system ATP-binding protein.
 
 0.879
SDU84086.1
MbtH protein.
       0.879
SDU83890.1
ABC-2 type transport system permease protein.
  
  
  0.846
SDU84057.1
Anti-sigma-K factor RskA.
       0.817
SDU84064.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.817
SDU84095.1
Amino acid adenylation domain-containing protein.
  
  
 0.808
Your Current Organism:
Gordonia westfalica
NCBI taxonomy Id: 158898
Other names: CCUG 46924, DSM 44215, G. westfalica, Gordonia westfalica Linos et al. 2002, JCM 11757, NRRL B-24152, strain Kb2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.