STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB562_00260Unannotated protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (137 aa)    
Predicted Functional Partners:
BB562_00255
Unannotated protein.
       0.636
GCA_001188985_00971
Unannotated protein.
  
 
 0.628
trxA
Unannotated protein; Belongs to the thioredoxin family.
  
 
 0.593
GCA_001188985_00972
Unannotated protein.
  
 
 0.593
trxA-2
Unannotated protein; Belongs to the thioredoxin family.
  
 
 0.593
BB562_15600
Unannotated protein; Belongs to the thioredoxin family.
  
 
 0.560
BB562_04540
Unannotated protein.
  
 
 0.539
BB562_10405
Unannotated protein.
  
 
 0.539
ybeY
Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.538
truA
Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.533
Your Current Organism:
Lactobacillus pentosus
NCBI taxonomy Id: 1589
Other names: ATCC 8041, CCUG 33455, CIP 103156, DSM 20314, L. pentosus, LMG 10755, LMG:10755, NCAIM B.01727, NCCB 32014, NCDO 363, NCIMB 8026, NRRL B-227, NRRL B-473
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.